common/scripts/lint-conflicts: handle emptied packages

common/scripts/lint-conflicts

@@ -130,9 +130,12 @@ group_by_file_partial() {
 	# for all packages in xlocate
 	local pkgname file
 	## newly built packages
+	while read -r pkgver; do
+		pkgname=${pkgver%-*}
+		newly_built[$pkgname]=$pkgname
+	done < <(xbps-query "${repositories[@]}" -i -R -s '' | cut -d' ' -f 2)
 	while read -r pkgname file; do
 		owners[$file]+=" $pkgname"
-		newly_built[$pkgname]=$pkgname
 	done < <(list_newly_built_files)
 	## rest of repository
 	while read -r pkgver file; do